Usage: sga correct-long [OPTION] ... READSFILE
Correct sequencing errors in the long reads in READSFILE

      --help                           display this help and exit
      -v, --verbose                    display verbose output
      -p, --prefix=PREFIX              use PREFIX for the names of the index files
      -o, --outfile=FILE               write the corrected reads to FILE (default: READSFILE.ec.fa)
      -m, --min-length=LEN             only process reads with length at least LEN bp (default 200bp)
      -d, --sample-rate=N              use occurrence array sample rate of N in the FM-index. Higher values use significantly
                                       less memory at the cost of higher runtime. This value must be a power of 2 (default: 128)
      -z, --z-best=N                   keep N hits at each node.
      -t, --threads=NUM                use NUM threads for the computation (default: 1)
          --cut=STR                    use STR as the cell pruning heuristic. Options are strata, zbest, score, none.

Report bugs to js18@sanger.ac.uk