Usage: sga correct-long [OPTION] ... READSFILE Correct sequencing errors in the long reads in READSFILE --help display this help and exit -v, --verbose display verbose output -p, --prefix=PREFIX use PREFIX for the names of the index files -o, --outfile=FILE write the corrected reads to FILE (default: READSFILE.ec.fa) -m, --min-length=LEN only process reads with length at least LEN bp (default 200bp) -d, --sample-rate=N use occurrence array sample rate of N in the FM-index. Higher values use significantly less memory at the cost of higher runtime. This value must be a power of 2 (default: 128) -z, --z-best=N keep N hits at each node. -t, --threads=NUM use NUM threads for the computation (default: 1) --cut=STR use STR as the cell pruning heuristic. Options are strata, zbest, score, none. Report bugs to js18@sanger.ac.uk