Carrot root and DNA VCRU Bioinformatics USDA ARS Vegetable Crops Research Unit

This page was last updated on Wednesday, 16-Jul-2014 15:36:04 CDT

Installation notes for SGA - String Graph Assembler version 0.10.13

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Prerequisites

Installation

  1. $ cd /programinstallers/
  2. $ git clone https://github.com/jts/sga.git
  3. $ cd sga/src
  4. $ ./autogen.sh
  5. $ ./configure --with-bamtools=/usr/local/include/bamtools-for-SGA --with-hoard=/usr/lib64
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  6. $ make
  7. $ make install
  8. $
  9. $
  10. Cleanup
    $ cd /programinstallers
  11. $ rm sga -rf