This page was last updated on Friday, 23-Dec-2016 10:51:16 CST
Installation notes for RSEM version 1.3.0
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Prerequisites
C++, Perl and R are required to be installed.
To use the --gff3 option of rsem-prepare-reference, Python is also required to be installed.
To take advantage of RSEM's built-in support for the Bowtie/Bowtie 2/STAR alignment program,
you must have Bowtie/Bowtie 2/STAR installed.
Installation
- $ ver="1.3.0"
- $ cd /programinstallers/
- $ wget -N https://github.com/deweylab/RSEM/archive/v$ver.tar.gz
- $ mv v$ver.tar.gz rsem-v$ver.tar.gz
- $ cd /usr/local/bin
- $ tar -zxvf /programinstallers/rsem-v$ver.tar.gz
- $ cd RSEM-$ver
- $ make
- EBSeq and blockmodeling install, note that this will not update an existing version
$ make ebseq
- $ cd ..
- Make a version-independent symlink
$ ln -s RSEM-$ver rsem
- Add to default PATH
$ sudo nano /etc/profile
…
PATH="$PATH:/usr/local/bin/rsem"
…
- Cleanup. Remove most of the source code
$ rm rsem/*.{cpp,h,o}
- $ rm rsem/boost -rf
- $ rm rsem/sam/*.{c,h,o} sam/bcftools/*.{c,h,o}