This page was last updated on Wednesday, 17-Sep-2014 15:10:59 CDT
Then do as it saysThe required version of setuptools (>=3.4.1) is not available, and can't be installed while this script is running. Please install a more recent version first, using 'easy_install -U setuptools'.
Ran 369 tests in 13.290s OK
Processing khmer Writing /usr/local/bin/khmer/setup.cfg Running setup.py -q bdist_egg --dist-dir /usr/local/bin/khmer/egg-dist-tmp-_0R7Oc warning: no previously-included files matching '*.orig' found anywhere in distribution make: Nothing to be done for `PIC'. #gcc -shared -Wl,-soname -Wl,libbz2.so.1.0 -o libbz2.so.1.0.6 blocksort.o huffman.o crctable.o randtable.o compress.o decompress.o bzlib.o #gcc -fpic -fPIC -Wall -Winline -O2 -g -D_FILE_OFFSET_BITS=64 -o bzip2-shared bzip2.c libbz2.so.1.0.6 #rm -f libbz2.so.1.0 #ln -s libbz2.so.1.0.6 libbz2.so.1.0 Adding khmer 1.2-rc1-66-g1292fa7-dirty to easy-install.pth file Installing filter-abund-single.py script to /usr/local/bin Installing abundance-dist.py script to /usr/local/bin Installing split-paired-reads.py script to /usr/local/bin Installing count-median.py script to /usr/local/bin Installing extract-partitions.py script to /usr/local/bin Installing find-knots.py script to /usr/local/bin Installing extract-paired-reads.py script to /usr/local/bin Installing load-into-counting.py script to /usr/local/bin Installing sample-reads-randomly.py script to /usr/local/bin Installing filter-abund.py script to /usr/local/bin Installing load-graph.py script to /usr/local/bin Installing extract-long-sequences.py script to /usr/local/bin Installing fastq-to-fasta.py script to /usr/local/bin Installing interleave-reads.py script to /usr/local/bin Installing make-initial-stoptags.py script to /usr/local/bin Installing abundance-dist-single.py script to /usr/local/bin Installing filter-stoptags.py script to /usr/local/bin Installing annotate-partitions.py script to /usr/local/bin Installing merge-partitions.py script to /usr/local/bin Installing partition-graph.py script to /usr/local/bin Installing do-partition.py script to /usr/local/bin Installing normalize-by-median.py script to /usr/local/bin Installing count-overlap.py script to /usr/local/bin Installed /usr/local/lib/python2.7/dist-packages/khmer-1.2_rc1_66_g1292fa7_dirty-py2.7-linux-x86_64.egg Processing dependencies for khmer==1.2-rc1-66-g1292fa7-dirty Finished processing dependencies for khmer==1.2-rc1-66-g1292fa7-dirty