This page was last updated on Friday, 22-Dec-2023 14:29:47 CST
Installation notes for HMMER version 3.1b1
Home Page
Prerequisites
None
Installation
- $ ver="3.1b1"
- $ cd /programinstallers/
$ wget -N http://selab.janelia.org/software/hmmer3/$ver/hmmer-${ver}-linux-intel-x86_64.tar.gz
- $ wget -N http://eddylab.org/software/hmmer/hmmer-$ver.tar.gz
- $ tar -zxvf hmmer-${ver}-linux-intel-x86_64.tar.gz
- $ cd hmmer-${ver}-linux-intel-x86_64
- $ ./configure
- $ make
- $ make check
…
All 260 exercises at level <= 2 passed.
…
- $ sudo make install
…
for file in alimask hmmalign hmmbuild hmmconvert hmmemit hmmfetch hmmlogo hmmpress hmmscan hmmsearch hmmsim hmmstat jackhmmer phmmer nhmmer nhmmscan hmmpgmd hmmc2; do \
/usr/bin/install -c -m 0755 $file /usr/local/bin/ ;\
done
…
- $ cd easel
- $ sudo make install
…
for file in esl-afetch esl-alimanip esl-alimap esl-alimask esl-alimerge esl-alipid esl-alistat esl-cluster esl-compalign esl-compstruct esl-construct esl-histplot esl-mask esl-reformat esl-selectn esl-seqrange esl-seqstat esl-sfetch esl-shuffle esl-ssdraw esl-stranslate esl-weight ; do \
/usr/bin/install -c -m 0755 $file /usr/local/bin/ ;\
done
…
- Cleanup
$ cd ../..
- $ rm hmmer-${ver}-linux-intel-x86_64 -rf