This page was last updated on Saturday, 12-Nov-2016 10:24:48 CST
Installation notes for FGAP version 1_7 2014-07-17
FGAP web site (not working on 1/27/2014)
Sourceforge page
Publication
Prerequisites
None
Installation
- $ ver="1_7"
- $ cd /programinstallers/
- MATLAB Compiler Runtime (MCR) is also available on the sourceforge page.
This appears to be a 2012 version, see here
$ wget -N http://downloads.sourceforge.net/project/fgap/MCR_LINUX64b.tar.gz
- $ wget -N http://downloads.sourceforge.net/project/fgap/FGAP_${ver}_LINUX64b.tar.gz
- $ mkdir /usr/local/bin/fgapdir
- $ cd /usr/local/bin/fgapdir
- $ tar -zxvf /programinstallers/MCR_LINUX64b.tar.gz
- $ tar -zxvf /programinstallers/FGAP_${ver}_LINUX64b.tar.gz
- There appears to be minimal documentation. Copy the README file to local web page
$ cp -puv FGAP_1_7_LINUX64b/README /programinstallers/programs/fgap/README.txt
- $ cd MCR_LINUX64b/
- $ ./installMCR.sh /usr/local/bin/fgapdir/mcr
…
(Jan 28, 2015 08:17:59) End - Successful.
Finished
- $ cd ..
- Cleanup
$ rm MCR_LINUX64b -rf
- $ cd ..
- Modify the launcher script FGAP_1_7_LINUX64b/run_fgap.sh
by modifying it to automatically include the mcr directory,
and rename it to fgap for simplicity
A copy of the modified launcher is here:
fgap
$ wget -N http://vcru.wisc.edu/simonlab/bioinformatics/programs/fgap/fgap
- $ chmod +x fgap
- For convenience, make a symlink for the sample data directory
$ cd fgapdir
- $ ln -s FGAP_${ver}_LINUX64b/sample_data