This page was last updated on Sunday, 20-Nov-2016 11:46:21 CST
Installation notes for FASTA version 36.3.6d Dec. 12, 2013
Home Page
Prerequisites
None
Installation
- $ ver="36.3.6d"
- $ cd /programinstallers/
- $ wget -N http://faculty.virginia.edu/wrpearson/fasta/fasta36/fasta-$ver.tar.gz
- $ wget -N http://faculty.virginia.edu/wrpearson/fasta/fasta_guide.pdf
- $ tar -zxvf fasta-$ver.tar.gz
- $ cd fasta-$ver/src
- $ make -f ../make/Makefile.linux64 all
- $ cd ../bin
- Manual install, because the Makefile wants to install to /seqprg/bin/
$ cp -puv fasta36 ssearch36 lalign36 fasts36 fastx36 tfastx36 fasty36 tfasty36 tfasts36 fastm36 tfastm36 fastf36 tfastf36 glsearch36 ggsearch36 lav2ps lav2svg map_db /usr/local/bin/
`fasta36' -> `/usr/local/bin/fasta36'
`ssearch36' -> `/usr/local/bin/ssearch36'
`lalign36' -> `/usr/local/bin/lalign36'
`fasts36' -> `/usr/local/bin/fasts36'
`fastx36' -> `/usr/local/bin/fastx36'
`tfastx36' -> `/usr/local/bin/tfastx36'
`fasty36' -> `/usr/local/bin/fasty36'
`tfasty36' -> `/usr/local/bin/tfasty36'
`tfasts36' -> `/usr/local/bin/tfasts36'
`fastm36' -> `/usr/local/bin/fastm36'
`tfastm36' -> `/usr/local/bin/tfastm36'
`fastf36' -> `/usr/local/bin/fastf36'
`tfastf36' -> `/usr/local/bin/tfastf36'
`glsearch36' -> `/usr/local/bin/glsearch36'
`ggsearch36' -> `/usr/local/bin/ggsearch36'
`lav2ps' -> `/usr/local/bin/lav2ps'
`lav2svg' -> `/usr/local/bin/lav2svg'
`map_db' -> `/usr/local/bin/map_db'
- Cleanup
$ cd ../..
- $ rm fasta-$ver -rf