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Installation notes for FASTA version 36.3.6d Dec. 12, 2013

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Prerequisites

None

Installation

  1. $ ver="36.3.6d"
  2. $ cd /programinstallers/
  3. $ wget -N http://faculty.virginia.edu/wrpearson/fasta/fasta36/fasta-$ver.tar.gz
  4. $ wget -N http://faculty.virginia.edu/wrpearson/fasta/fasta_guide.pdf
  5. $ tar -zxvf fasta-$ver.tar.gz
  6. $ cd fasta-$ver/src
  7. $ make -f ../make/Makefile.linux64 all
  8. $ cd ../bin
  9. Manual install, because the Makefile wants to install to /seqprg/bin/
    $ cp -puv fasta36 ssearch36 lalign36 fasts36 fastx36 tfastx36 fasty36 tfasty36 tfasts36 fastm36 tfastm36 fastf36 tfastf36 glsearch36 ggsearch36 lav2ps lav2svg map_db /usr/local/bin/
    `fasta36' -> `/usr/local/bin/fasta36'
    `ssearch36' -> `/usr/local/bin/ssearch36'
    `lalign36' -> `/usr/local/bin/lalign36'
    `fasts36' -> `/usr/local/bin/fasts36'
    `fastx36' -> `/usr/local/bin/fastx36'
    `tfastx36' -> `/usr/local/bin/tfastx36'
    `fasty36' -> `/usr/local/bin/fasty36'
    `tfasty36' -> `/usr/local/bin/tfasty36'
    `tfasts36' -> `/usr/local/bin/tfasts36'
    `fastm36' -> `/usr/local/bin/fastm36'
    `tfastm36' -> `/usr/local/bin/tfastm36'
    `fastf36' -> `/usr/local/bin/fastf36'
    `tfastf36' -> `/usr/local/bin/tfastf36'
    `glsearch36' -> `/usr/local/bin/glsearch36'
    `ggsearch36' -> `/usr/local/bin/ggsearch36'
    `lav2ps' -> `/usr/local/bin/lav2ps'
    `lav2svg' -> `/usr/local/bin/lav2svg'
    `map_db' -> `/usr/local/bin/map_db'
  10. Cleanup
    $ cd ../..
  11. $ rm fasta-$ver -rf