This page was last updated on Friday, 30-Jan-2015 09:05:44 CST
Installation notes for CD-HIT version 4.6.1-2012-08-27
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Prerequisites
None
Installation
- $ ver="v4.6.1-2012-08-27"
- $ cd /programinstallers/
- $ wget -N https://cdhit.googlecode.com/files/cd-hit-$ver.tgz
$ wget -N http://cdhit.googlecode.com/files/cd-hit-otu-illumina-0.0.1.tar.gz
$ wget -N http://cdhit.googlecode.com/files/cd-hit-otu-454-0.0.2-patched.tar.gz
- $ tar -zxvf cd-hit-$ver.tgz
- $ cd cd-hit-$ver
- $ make openmp=yes
- $ make install
…
for prog in cd-hit cd-hit-est cd-hit-2d cd-hit-est-2d cd-hit-div cd-hit-454; do \
install -m 0755 $prog /usr/local/bin; \
done
install -m 0755 *.pl /usr/local/bin;
…
- List of Perl programs that were installed:
cd-hit-2d-para.pl
cd-hit-div.pl
cd-hit-para.pl
clstr2tree.pl
clstr2txt.pl
clstr2xml.pl
clstr_cut.pl
clstr_merge_noorder.pl
clstr_merge.pl
clstr_quality_eval_by_link.pl
clstr_quality_eval.pl
clstr_reduce.pl
clstr_renumber.pl
clstr_rep.pl
clstr_reps_faa_rev.pl
clstr_rev.pl
clstr_select.pl
clstr_select_rep.pl
clstr_size_histogram.pl
clstr_size_stat.pl
clstr_sort_by.pl
clstr_sort_prot_by.pl
clstr_sql_tbl.pl
clstr_sql_tbl_sort.pl
make_multi_seq.pl
plot_2d.pl
plot_len1.pl
psi-cd-hit-2d-g1.pl
psi-cd-hit-2d.pl
psi-cd-hit-local.pl
psi-cd-hit.pl
- Copy documentation for web page
$ mkdir /U:/simonlabweb/bioinformatics/programs/cd-hit
- $ cp -puv doc/cdhit-user-guide.pdf /U:/simonlabweb/bioinformatics/programs/cd-hit/
- Cleanup
$ cd ..
- $ rm cd-hit-$ver -rf