This page was last updated on Saturday, 19-Nov-2016 15:54:00 CST
Installation notes for bfast version 0.7.0a
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Prerequisites
Installation
- $ ver=""
- $ cd /programinstallers/
- $ git clone git://bfast.git.sourceforge.net/gitroot/bfast/bfast
- $ cd bfast
- $ sh autogen.sh
- $ ./configure
- $ make
- Ubuntu 16.04 two header files had inline functions declared that did not match
code in .c file, remove "inline" from
inline char ToUpper(char);
in bfast/BLib.h
and twice from
inline int32_t ScoringMatrixGetNTScore(char, char, ScoringMatrix*);
inline int32_t ScoringMatrixGetColorScore(char, char, ScoringMatrix*);
in bfast/ScoringMatrix.h
- $ make install
- Error installing docs
test -z "/usr/local/share/doc/bfast" || /bin/mkdir -p "/usr/local/share/doc/bfast"
/bin/mkdir: cannot create directory `/usr/local/share/doc': Permission denied
so do this
$ sudo mkdir /usr/local/share/doc && sudo chmod 777 /usr/local/share/doc 4
- Copy the utility programs too
$ cp -pu /programinstallers/bfast/butil/btestindexes /usr/local/bin/
There are some other utilities I did not copy