This page was last updated on Thursday, 10-Jul-2014 14:37:29 CDT
set appropriate environment variable before running configure, e.g.WARNING! nucmer was not found but is required to run AMOScmp and minimus2 install nucmer if planning on using these programs
Some influential environment variables: PERL perl command PYTHON python command NUCMER nucmer command DELTAFILTER delta-filter command SHOWCOORDS show-coords command BLAT blat command CXX C++ compiler command CXXFLAGS C++ compiler flags LDFLAGS linker flags, e.g. -L if you have libraries in a nonstandard directory LIBS libraries to pass to the linker, e.g. -l CPPFLAGS (Objective) C/C++ preprocessor flags, e.g. -I if you have headers in a nonstandard directory CC C compiler command CFLAGS C compiler flags CPP C preprocessor XMKMF Path to xmkmf, Makefile generator for X Window System